Publications
Selected Papers
1. Zhang B, Chen L, Xiao S, Dang C, Wang F, Fang Q, Ye X, Stanley DW, Ye G* . iSalivaomicDB: A comprehensive saliva omics database for insects. Insect Science , 2024 Mar 7. [ Pubmed ]
2. He C, Ye X, Yang Y, Hu L, Si Y, Zhao X, Chen L, Fang Q, Wei Y, Wu F, Ye G* . DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins. Briefings in Bioinformatics , 2023 Jul 20;24(4):bbad246 [ Pubmed ]
3. Chen L, Lang K, Zhang B, Shi J, Ye X, Stanley DW, Fang Q, Ye G* . iVenomDB: A manually curated database for insect venom proteins. Insect Science , 2022, 5:28 [ Pubmed ]
4. Ye X, Yan Z, Yang Y, Xiao S, Chen L, Wang J, Wang F, Xiong S, Mei Y, Wang F, Yao H, Song Q, Li F, Fang Q, Werren JH, Ye G* . A chromosome-level genome assembly of the parasitoid wasp Pteromalus puparum. Molecular Ecology Resources , 2020 Sep;20(5):1384-1402 [ Pubmed ]
5. Jia W, Wang F, Xiao S, Yang Y, Chen L, Li J, Bao Y, Song Q, Ye G* Identification and characterization of a novel rhabdovirus in green rice leafhopper, Nephotettix cincticeps. Virus Research , 2021 Apr 15;296:198281 [ Pubmed ]
6. Chen L, Lang K, Mei Y, Shi Z, He K, Li F, Xiao H, Ye G, Han Z* . FastD: Fast detection of insecticide target-site mutations and overexpressed detoxification genes in insect populations from RNA-Seq data. Ecology and Evolution , 2020 Nov 21;10(24):14346-14358 [ Pubmed ]
7. Wan F, Yin C, Tang R, Chen M, Wu Q, Huang C, Qian W, Rota-Stabelli O, Yang N, Wang S, Wang G, Zhang G, Guo J, Gu LA, Chen L, Xing L, Xi Y, Liu F, Lin K, Guo M, Liu W, He K, Tian R, Jacquin-Joly E, Franck P, Siegwart M, Ometto L, Anfora G, Blaxter M, Meslin C, Nguyen P, Dalíková M, Marec F, Olivares J, Maugin S, Shen J, Liu J, Guo J, Luo J, Liu B, Fan W, Feng L, Zhao X, Peng X, Wang K, Liu L, Zhan H, Liu W, Shi G, Jiang C, Jin J, Xian X, Lu S, Ye M, Li M, Yang M, Xiong R, Walters JR, Li F* . A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance. Nature Communications , 2019 Sep 17;10(1):4237 [ Pubmed ]
8. Chen L, Lang K, Bi S, Luo J, Liu F, Ye X, Xu J, He K, Li F, Ye G* . WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants. Database , 2018 Jan 1;2018:1-9 [ Pubmed ]